Course Outline

Introduction to the Python programming language

  • Why Python?
  • Using Python to deal with biological data
  • Working with the iPython shell
  • Your first programme
  • Writing Python scripts
  • Importing modules

Working with protein and RNA/DNA sequences

  • Finding motives
  • Transcription and translation in silico
  • Handling sequence alignments

Parsing data in different biological formats

  • Parsing FASTA
  • Data format conversions

Running biological analyses

  • BLAST
  • Accessing biological web services

Dealing with biological 3D structures using Python

Python facilitates statistical analysis

Visualizing data

  • Creating bar and scatter plots
  • Calculating an Area Under Curve (AUC)

Working with .xls and .csv files

  • Importing data from and exporting to MS Excel / OpenOffice Calc
  • Writing .xls and .csv files

Using Python to create an automated data processing pipeline

Requirements

Basic biological knowledge about protein, RNA and DNA sequences.

 28 Hours

Delivery Options

Private Group Training

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  • Pre-course call with your trainer
  • Customisation of the learning experience to achieve your goals -
    • Bespoke outlines
    • Practical hands-on exercises containing data / scenarios recognisable to the learners
  • Training scheduled on a date of your choice
  • Delivered online, onsite/classroom or hybrid by experts sharing real world experience

Private Group Prices RRP from €9120 online delivery, based on a group of 2 delegates, €2880 per additional delegate (excludes any certification / exam costs). We recommend a maximum group size of 12 for most learning events.

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